clinvar-this
latest
Contents
Installation
Getting Started
API vs. CLI
Library Usage
Command Line Usage
File Formats
Limitations
Common Errors
Project Info
Contributing
Credits
Changelog
CLI
Command Line Interface
API
clinvar_api
clinvar_api package
clinvar_api.msg package
clinvar_api.models package
clinvar_this
clinvar_this package
clinvar-this
Index
Edit on GitHub
Index
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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T
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U
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V
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X
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Y
Symbols
--dry-run
clinvar-this-batch-submit command line option
--force
clinvar-this-batch-export command line option
--gzip-output
clinvar-this-data-extract-vars command line option
--max-records
clinvar-this-data-xml-to-jsonl command line option
--metadata
clinvar-this-batch-import command line option
--name
clinvar-this-batch-import command line option
--needs-hpo-terms
clinvar-this-data-gene-phenotype-links command line option
--no-dry-run
clinvar-this-batch-submit command line option
--no-force
clinvar-this-batch-export command line option
--no-gzip-output
clinvar-this-data-extract-vars command line option
--no-needs-hpo-terms
clinvar-this-data-gene-phenotype-links command line option
--no-struc-var
clinvar-this-batch-export command line option
--no-testing
clinvar-this-batch-retrieve command line option
clinvar-this-batch-submit command line option
--no-verbose
clinvar-this command line option
--no-verify-ssl
clinvar-this command line option
--profile
clinvar-this command line option
clinvar-this-config-get command line option
--struc-var
clinvar-this-batch-export command line option
--thresholds
clinvar-this-data-acmg-class-by-freq command line option
--use-testing
clinvar-this-batch-retrieve command line option
clinvar-this-batch-submit command line option
--verbose
clinvar-this command line option
--verify-ssl
clinvar-this command line option
--version
clinvar-this command line option
-m
clinvar-this-batch-import command line option
A
ABSENT (clinvar_api.msg.sub_payload.ClinicalFeaturesAffectedStatus attribute)
accession (clinvar_api.models.query_response.SubmissionStatusObject attribute)
(clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.models.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
(clinvar_api.msg.query_response.SubmissionStatusObject attribute)
(clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
accession_set (clinvar_api.models.sub_payload.SubmissionClinvarDeletion attribute)
accessionSet (clinvar_api.msg.sub_payload.SubmissionClinvarDeletion attribute)
actions (clinvar_api.models.query_response.SubmissionStatus attribute)
(clinvar_api.msg.query_response.SubmissionStatus attribute)
AFFECTED (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
affected_status (clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
AffectedStatus (class in clinvar_api.msg.sub_payload)
affectedStatus (clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
ALL_FAILURE (clinvar_api.msg.query_response.ErrorCode attribute)
allele_origin (clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
AlleleOrigin (class in clinvar_api.msg.sub_payload)
alleleOrigin (clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
alternate_allele (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
alternateAllele (clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
ArgumentsError
Assembly (class in clinvar_api.msg.sub_payload)
assembly (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
assertion_criteria (clinvar_api.models.sub_payload.SubmissionContainer attribute)
assertionCriteria (clinvar_api.msg.sub_payload.SubmissionContainer attribute)
ASSOCIATION (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
async_retrieve_status() (in module clinvar_api.client)
async_submit_data() (in module clinvar_api.client)
AsyncClient (class in clinvar_api.client)
auth_token (clinvar_api.client.Config attribute)
AUTOSOMAL_DOMINANT_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
AUTOSOMAL_DOMINANT_INHERITANCE_WITH_MATERNAL_IMPRINTING (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
AUTOSOMAL_DOMINANT_INHERITANCE_WITH_PATERNAL_IMPRINTING (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
AUTOSOMAL_RECESSIVE_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
AUTOSOMAL_UNKNOWN (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
B
batch_processing_status (clinvar_api.models.sub_response.SummaryResponse attribute)
batch_release_status (clinvar_api.models.sub_response.SummaryResponse attribute)
BatchProcessingStatus (class in clinvar_api.msg.sub_response)
batchProcessingStatus (clinvar_api.msg.sub_response.SummaryResponse attribute)
BatchReleaseStatus (class in clinvar_api.msg.sub_response)
batchReleaseStatus (clinvar_api.msg.sub_response.SummaryResponse attribute)
behalf_org_id (clinvar_api.models.sub_payload.SubmissionContainer attribute)
behalfOrgID (clinvar_api.msg.sub_payload.SubmissionContainer attribute)
BENIGN (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
BIPARENTL (clinvar_api.msg.sub_payload.AlleleOrigin attribute)
BOOKSHELF (clinvar_api.msg.sub_payload.CitationDb attribute)
C
CASE_CONTROL (clinvar_api.msg.sub_payload.CollectionMethod attribute)
CHR1 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR10 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR11 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR12 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR13 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR14 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR15 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR16 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR17 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR18 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR19 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR2 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR20 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR21 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR22 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR3 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR4 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR5 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR6 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR7 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR8 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHR9 (clinvar_api.msg.sub_payload.Chromosome attribute)
CHRMT (clinvar_api.msg.sub_payload.Chromosome attribute)
Chromosome (class in clinvar_api.msg.sub_payload)
chromosome (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
chromosome_coordinates (clinvar_api.models.sub_payload.SubmissionVariant attribute)
chromosomeCoordinates (clinvar_api.msg.sub_payload.SubmissionVariant attribute)
CHRX (clinvar_api.msg.sub_payload.Chromosome attribute)
CHRY (clinvar_api.msg.sub_payload.Chromosome attribute)
citation (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
CitationDb (class in clinvar_api.msg.sub_payload)
clean_for_json() (in module clinvar_api.common)
Client (class in clinvar_api.client)
clinical_features (clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
clinical_features_affected_status (clinvar_api.models.sub_payload.SubmissionClinicalFeature attribute)
clinical_features_comment (clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
clinical_significance (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
clinical_significance_description (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
CLINICAL_TESTING (clinvar_api.msg.sub_payload.CollectionMethod attribute)
clinicalFeatures (clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
ClinicalFeaturesAffectedStatus (class in clinvar_api.msg.sub_payload)
clinicalFeaturesAffectedStatus (clinvar_api.msg.sub_payload.SubmissionClinicalFeature attribute)
clinicalFeaturesComment (clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
ClinicalFeaturesDb (class in clinvar_api.msg.sub_payload)
clinicalSignificance (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
ClinicalSignificanceDescription (class in clinvar_api.msg.sub_payload)
clinicalSignificanceDescription (clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
clinvar-this command line option
--no-verbose
--no-verify-ssl
--profile
--verbose
--verify-ssl
--version
clinvar-this-batch-export command line option
--force
--no-force
--no-struc-var
--struc-var
NAME
PATH
clinvar-this-batch-import command line option
--metadata
--name
-m
PATH
clinvar-this-batch-retrieve command line option
--no-testing
--use-testing
NAME
clinvar-this-batch-submit command line option
--dry-run
--no-dry-run
--no-testing
--use-testing
NAME
clinvar-this-batch-update-metadata command line option
METADATA
NAME
clinvar-this-config-get command line option
--profile
NAME
clinvar-this-config-set command line option
NAME
VALUE
clinvar-this-data-acmg-class-by-freq command line option
--thresholds
INPUT_FILE
OUTPUT_FILE
clinvar-this-data-extract-vars command line option
--gzip-output
--no-gzip-output
PATH_INPUT
PATH_OUTPUT_DIR
clinvar-this-data-gene-phenotype-links command line option
--needs-hpo-terms
--no-needs-hpo-terms
INPUT_FILE
OUTPUT_FILE
clinvar-this-data-gene-variant-report command line option
INPUT_FILE
OUTPUT_FILE
clinvar-this-data-xml-to-jsonl command line option
--max-records
INPUT_FILE
OUTPUT_FILE
clinvar_accession (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmissionIdentifiers attribute)
clinvar_accession_version (clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
clinvar_api
module
clinvar_api.client
module
clinvar_api.common
module
clinvar_api.constants
module
clinvar_api.exceptions
module
clinvar_api.models
module
clinvar_api.models.query_response
module
clinvar_api.models.sub_payload
module
clinvar_api.models.sub_response
module
clinvar_api.msg
module
clinvar_api.msg.query_response
module
clinvar_api.msg.sub_payload
module
clinvar_api.msg.sub_response
module
clinvar_deletion (clinvar_api.models.sub_payload.SubmissionContainer attribute)
clinvar_local_key (clinvar_api.models.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmissionIdentifiers attribute)
clinvar_processing_status (clinvar_api.models.query_response.SubmissionStatusObjectContent attribute)
clinvar_release_status (clinvar_api.models.query_response.SubmissionStatusObjectContent attribute)
clinvar_submission (clinvar_api.models.sub_payload.SubmissionContainer attribute)
clinvar_submission_release_status (clinvar_api.models.sub_payload.SubmissionContainer attribute)
clinvar_this
module
clinvar_this.cli
module
clinvar_this.exceptions
module
clinvarAccession (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmissionIdentifiers attribute)
clinvarAccessionVersion (clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
ClinvarApiException
clinvarDeletion (clinvar_api.msg.sub_payload.SubmissionContainer attribute)
clinvarLocalKey (clinvar_api.msg.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmissionIdentifiers attribute)
clinvarProcessingStatus (clinvar_api.msg.query_response.SubmissionStatusObjectContent attribute)
clinvarReleaseStatus (clinvar_api.msg.query_response.SubmissionStatusObjectContent attribute)
clinvarSubmission (clinvar_api.msg.sub_payload.SubmissionContainer attribute)
clinvarSubmissionReleaseStatus (clinvar_api.msg.sub_payload.SubmissionContainer attribute)
ClinvarThisException
CO_OCCURING (clinvar_api.msg.sub_payload.MultipleConditionExplanation attribute)
CODOMINANT (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
collection_method (clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
CollectionMethod (class in clinvar_api.msg.sub_payload)
collectionMethod (clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
comment (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
COMPLEX (clinvar_api.msg.sub_payload.VariantType attribute)
compound_heterozygote_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
compoundHeterozygoteSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
condition (clinvar_api.models.sub_payload.SubmissionConditionSet attribute)
(clinvar_api.models.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.msg.sub_payload.SubmissionConditionSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDrugResponse attribute)
condition_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
ConditionDb (class in clinvar_api.msg.sub_payload)
conditionSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
CONFERS_SENSITIVITY (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
Config (class in clinvar_api.client)
ConfigException
ConfigFileMissingException
content (clinvar_api.models.query_response.SubmissionStatusObject attribute)
(clinvar_api.msg.query_response.SubmissionStatusObject attribute)
copy_number (clinvar_api.models.sub_payload.SubmissionVariant attribute)
COPY_NUMBER_GAIN (clinvar_api.msg.sub_payload.VariantType attribute)
COPY_NUMBER_LOSS (clinvar_api.msg.sub_payload.VariantType attribute)
copyNumber (clinvar_api.msg.sub_payload.SubmissionVariant attribute)
Created (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
CURATED_PCR (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
CURATION (clinvar_api.msg.sub_payload.CollectionMethod attribute)
custom_assertion_score (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
customAssertionScore (clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
D
date_last_evaluated (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
dateLastEvaluated (clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
db (clinvar_api.models.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.models.sub_payload.SubmissionCitation attribute)
(clinvar_api.models.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.models.sub_payload.SubmissionCondition attribute)
(clinvar_api.models.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.msg.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.msg.sub_payload.SubmissionCitation attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.msg.sub_payload.SubmissionCondition attribute)
(clinvar_api.msg.sub_payload.SubmissionDrugResponse attribute)
DE_NOVO (clinvar_api.msg.sub_payload.AlleleOrigin attribute)
delete_date (clinvar_api.models.sub_response.SummaryResponseDeletion attribute)
delete_status (clinvar_api.models.sub_response.SummaryResponseDeletion attribute)
deleteDate (clinvar_api.msg.sub_response.SummaryResponseDeletion attribute)
deleteStatus (clinvar_api.msg.sub_response.SummaryResponseDeletion attribute)
DELETION (clinvar_api.msg.sub_payload.VariantType attribute)
deletions (clinvar_api.models.sub_response.SummaryResponse attribute)
(clinvar_api.msg.sub_response.SummaryResponse attribute)
DEMIDOMINANT_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
diplotype_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
diplotypeSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
distinct_chromosomes_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
distinctChromosomesSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
DOI (clinvar_api.msg.sub_payload.CitationDb attribute)
drug_name (clinvar_api.models.sub_payload.SubmissionDrugResponse attribute)
drug_response (clinvar_api.models.sub_payload.SubmissionConditionSet attribute)
DRUG_RESPONSE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
drugName (clinvar_api.msg.sub_payload.SubmissionDrugResponse attribute)
drugResponse (clinvar_api.msg.sub_payload.SubmissionConditionSet attribute)
DUPLICATION (clinvar_api.msg.sub_payload.VariantType attribute)
E
ENDPOINT_URL_PROD (in module clinvar_api.client)
ENDPOINT_URL_TEST (in module clinvar_api.client)
Error (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
ERROR (clinvar_api.msg.query_response.ProcessingStatus attribute)
(clinvar_api.msg.sub_response.BatchProcessingStatus attribute)
error_code (clinvar_api.models.query_response.SubmissionStatusResponseMessage attribute)
ErrorCode (class in clinvar_api.msg.query_response)
errorCode (clinvar_api.msg.query_response.SubmissionStatusResponseMessage attribute)
errors (clinvar_api.models.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.models.sub_response.SummaryResponseErrorOutput attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
(clinvar_api.msg.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorOutput attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
ESTABLISHED_RISK_ALLELE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
explanation_of_drug_response (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
explanation_of_other_clinical_significance (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
explanationOfDrugResponse (clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
explanationOfOtherClinicalSignificance (clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
extra_data (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
F
field (clinvar_api.models.sub_response.SummaryResponseErrorInput attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorInput attribute)
files (clinvar_api.models.query_response.SubmissionStatusResponse attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponse attribute)
from_msg() (clinvar_api.models.query_response.SubmissionStatus class method)
(clinvar_api.models.query_response.SubmissionStatusActions class method)
(clinvar_api.models.query_response.SubmissionStatusFile class method)
(clinvar_api.models.query_response.SubmissionStatusObject class method)
(clinvar_api.models.query_response.SubmissionStatusObjectContent class method)
(clinvar_api.models.query_response.SubmissionStatusResponse class method)
(clinvar_api.models.query_response.SubmissionStatusResponseMessage class method)
(clinvar_api.models.sub_response.Created class method)
(clinvar_api.models.sub_response.Error class method)
(clinvar_api.models.sub_response.SummaryResponse class method)
(clinvar_api.models.sub_response.SummaryResponseDeletion class method)
(clinvar_api.models.sub_response.SummaryResponseDeletionIdentifier class method)
(clinvar_api.models.sub_response.SummaryResponseError class method)
(clinvar_api.models.sub_response.SummaryResponseErrorInput class method)
(clinvar_api.models.sub_response.SummaryResponseErrorOutput class method)
(clinvar_api.models.sub_response.SummaryResponseErrorOutputError class method)
(clinvar_api.models.sub_response.SummaryResponseSubmission class method)
(clinvar_api.models.sub_response.SummaryResponseSubmissionIdentifiers class method)
G
gene (clinvar_api.models.sub_payload.SubmissionVariant attribute)
(clinvar_api.msg.sub_payload.SubmissionVariant attribute)
GENETIC_ANTICIPATION (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
GERMLINE (clinvar_api.msg.sub_payload.AlleleOrigin attribute)
GRCH37 (clinvar_api.msg.sub_payload.Assembly attribute)
GRCH38 (clinvar_api.msg.sub_payload.Assembly attribute)
H
haplotype_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSets attribute)
haplotype_sets (clinvar_api.models.sub_payload.SubmissionDiplotypeSet attribute)
haplotype_single_variant_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSets attribute)
haplotypeSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSets attribute)
haplotypeSets (clinvar_api.msg.sub_payload.SubmissionDiplotypeSet attribute)
haplotypeSingleVariantSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSets attribute)
HG18 (clinvar_api.msg.sub_payload.Assembly attribute)
HG19 (clinvar_api.msg.sub_payload.Assembly attribute)
HG38 (clinvar_api.msg.sub_payload.Assembly attribute)
hgvs (clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
(clinvar_api.models.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionPhaseUnknownSet attribute)
(clinvar_api.models.sub_payload.SubmissionVariant attribute)
(clinvar_api.msg.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionPhaseUnknownSet attribute)
(clinvar_api.msg.sub_payload.SubmissionVariant attribute)
HOLD_UNTIL_PUBLISHED (clinvar_api.msg.sub_payload.ReleaseStatus attribute)
HP (clinvar_api.msg.sub_payload.ClinicalFeaturesDb attribute)
(clinvar_api.msg.sub_payload.ConditionDb attribute)
I
id (clinvar_api.models.query_response.SubmissionStatusActions attribute)
(clinvar_api.models.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.models.sub_payload.SubmissionCitation attribute)
(clinvar_api.models.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.models.sub_payload.SubmissionCondition attribute)
(clinvar_api.models.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.models.sub_payload.SubmissionVariantGene attribute)
(clinvar_api.models.sub_response.Created attribute)
(clinvar_api.msg.query_response.SubmissionStatusActions attribute)
(clinvar_api.msg.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.msg.sub_payload.SubmissionCitation attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.msg.sub_payload.SubmissionCondition attribute)
(clinvar_api.msg.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.msg.sub_payload.SubmissionVariantGene attribute)
(clinvar_api.msg.sub_response.Created attribute)
identifiers (clinvar_api.models.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
(clinvar_api.msg.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
IN_PROCESSING (clinvar_api.msg.sub_response.BatchProcessingStatus attribute)
IN_VITRO (clinvar_api.msg.sub_payload.CollectionMethod attribute)
IN_VIVO (clinvar_api.msg.sub_payload.CollectionMethod attribute)
INHERITED (clinvar_api.msg.sub_payload.AlleleOrigin attribute)
inner_start (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
inner_stop (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
innerStart (clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
innerStop (clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
input (clinvar_api.models.sub_response.SummaryResponseError attribute)
(clinvar_api.msg.sub_response.SummaryResponseError attribute)
INPUT_FILE
clinvar-this-data-acmg-class-by-freq command line option
clinvar-this-data-gene-phenotype-links command line option
clinvar-this-data-gene-variant-report command line option
clinvar-this-data-xml-to-jsonl command line option
INSERTION (clinvar_api.msg.sub_payload.VariantType attribute)
InvalidFormat
INVERSION (clinvar_api.msg.sub_payload.VariantType attribute)
IOException
L
LIKELY_BENIGN (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
LIKELY_PATHOGENIC (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
LIKELY_PATHOGENIC_LOW_PENETRANCE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
LIKELY_RISK_ALLELE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
LITERATURE_ONLY (clinvar_api.msg.sub_payload.CollectionMethod attribute)
local_id (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmissionIdentifiers attribute)
local_key (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmissionIdentifiers attribute)
localID (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmissionIdentifiers attribute)
localKey (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmissionIdentifiers attribute)
M
MATERNAL (clinvar_api.msg.sub_payload.AlleleOrigin attribute)
MEDGEN (clinvar_api.msg.sub_payload.ConditionDb attribute)
MESH (clinvar_api.msg.sub_payload.ConditionDb attribute)
message (clinvar_api.models.query_response.SubmissionStatusResponse attribute)
(clinvar_api.models.sub_response.Error attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponse attribute)
(clinvar_api.msg.sub_response.Error attribute)
METADATA
clinvar-this-batch-update-metadata command line option
MITOCHONDRIAL_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
mode_of_inheritance (clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
model_config (clinvar_api.client.Config attribute)
(clinvar_api.client.RetrieveStatusResult attribute)
(clinvar_api.models.query_response.SubmissionStatus attribute)
(clinvar_api.models.query_response.SubmissionStatusActions attribute)
(clinvar_api.models.query_response.SubmissionStatusFile attribute)
(clinvar_api.models.query_response.SubmissionStatusObject attribute)
(clinvar_api.models.query_response.SubmissionStatusObjectContent attribute)
(clinvar_api.models.query_response.SubmissionStatusResponse attribute)
(clinvar_api.models.query_response.SubmissionStatusResponseMessage attribute)
(clinvar_api.models.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.models.sub_payload.SubmissionCitation attribute)
(clinvar_api.models.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
(clinvar_api.models.sub_payload.SubmissionClinvarDeletion attribute)
(clinvar_api.models.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
(clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
(clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSetVariantSet attribute)
(clinvar_api.models.sub_payload.SubmissionCondition attribute)
(clinvar_api.models.sub_payload.SubmissionConditionSet attribute)
(clinvar_api.models.sub_payload.SubmissionContainer attribute)
(clinvar_api.models.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.models.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSets attribute)
(clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
(clinvar_api.models.sub_payload.SubmissionPhaseUnknownSet attribute)
(clinvar_api.models.sub_payload.SubmissionVariant attribute)
(clinvar_api.models.sub_payload.SubmissionVariantGene attribute)
(clinvar_api.models.sub_payload.SubmissionVariantSet attribute)
(clinvar_api.models.sub_response.Created attribute)
(clinvar_api.models.sub_response.Error attribute)
(clinvar_api.models.sub_response.SummaryResponse attribute)
(clinvar_api.models.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.models.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.models.sub_response.SummaryResponseError attribute)
(clinvar_api.models.sub_response.SummaryResponseErrorInput attribute)
(clinvar_api.models.sub_response.SummaryResponseErrorOutput attribute)
(clinvar_api.models.sub_response.SummaryResponseErrorOutputError attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmissionIdentifiers attribute)
(clinvar_api.msg.query_response.SubmissionStatus attribute)
(clinvar_api.msg.query_response.SubmissionStatusActions attribute)
(clinvar_api.msg.query_response.SubmissionStatusFile attribute)
(clinvar_api.msg.query_response.SubmissionStatusObject attribute)
(clinvar_api.msg.query_response.SubmissionStatusObjectContent attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponse attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponseMessage attribute)
(clinvar_api.msg.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.msg.sub_payload.SubmissionCitation attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarDeletion attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
(clinvar_api.msg.sub_payload.SubmissionCompoundHeterozygoteSetVariantSet attribute)
(clinvar_api.msg.sub_payload.SubmissionCondition attribute)
(clinvar_api.msg.sub_payload.SubmissionConditionSet attribute)
(clinvar_api.msg.sub_payload.SubmissionContainer attribute)
(clinvar_api.msg.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSets attribute)
(clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
(clinvar_api.msg.sub_payload.SubmissionPhaseUnknownSet attribute)
(clinvar_api.msg.sub_payload.SubmissionVariant attribute)
(clinvar_api.msg.sub_payload.SubmissionVariantGene attribute)
(clinvar_api.msg.sub_payload.SubmissionVariantSet attribute)
(clinvar_api.msg.sub_response.Created attribute)
(clinvar_api.msg.sub_response.Error attribute)
(clinvar_api.msg.sub_response.SummaryResponse attribute)
(clinvar_api.msg.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.msg.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.msg.sub_response.SummaryResponseError attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorInput attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorOutput attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorOutputError attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmissionIdentifiers attribute)
model_fields (clinvar_api.client.Config attribute)
(clinvar_api.client.RetrieveStatusResult attribute)
(clinvar_api.models.query_response.SubmissionStatus attribute)
(clinvar_api.models.query_response.SubmissionStatusActions attribute)
(clinvar_api.models.query_response.SubmissionStatusFile attribute)
(clinvar_api.models.query_response.SubmissionStatusObject attribute)
(clinvar_api.models.query_response.SubmissionStatusObjectContent attribute)
(clinvar_api.models.query_response.SubmissionStatusResponse attribute)
(clinvar_api.models.query_response.SubmissionStatusResponseMessage attribute)
(clinvar_api.models.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.models.sub_payload.SubmissionCitation attribute)
(clinvar_api.models.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.models.sub_payload.SubmissionClinicalSignificance attribute)
(clinvar_api.models.sub_payload.SubmissionClinvarDeletion attribute)
(clinvar_api.models.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
(clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
(clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSetVariantSet attribute)
(clinvar_api.models.sub_payload.SubmissionCondition attribute)
(clinvar_api.models.sub_payload.SubmissionConditionSet attribute)
(clinvar_api.models.sub_payload.SubmissionContainer attribute)
(clinvar_api.models.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.models.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSets attribute)
(clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
(clinvar_api.models.sub_payload.SubmissionPhaseUnknownSet attribute)
(clinvar_api.models.sub_payload.SubmissionVariant attribute)
(clinvar_api.models.sub_payload.SubmissionVariantGene attribute)
(clinvar_api.models.sub_payload.SubmissionVariantSet attribute)
(clinvar_api.models.sub_response.Created attribute)
(clinvar_api.models.sub_response.Error attribute)
(clinvar_api.models.sub_response.SummaryResponse attribute)
(clinvar_api.models.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.models.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.models.sub_response.SummaryResponseError attribute)
(clinvar_api.models.sub_response.SummaryResponseErrorInput attribute)
(clinvar_api.models.sub_response.SummaryResponseErrorOutput attribute)
(clinvar_api.models.sub_response.SummaryResponseErrorOutputError attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmissionIdentifiers attribute)
(clinvar_api.msg.query_response.SubmissionStatus attribute)
(clinvar_api.msg.query_response.SubmissionStatusActions attribute)
(clinvar_api.msg.query_response.SubmissionStatusFile attribute)
(clinvar_api.msg.query_response.SubmissionStatusObject attribute)
(clinvar_api.msg.query_response.SubmissionStatusObjectContent attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponse attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponseMessage attribute)
(clinvar_api.msg.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.msg.sub_payload.SubmissionCitation attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarDeletion attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
(clinvar_api.msg.sub_payload.SubmissionCompoundHeterozygoteSetVariantSet attribute)
(clinvar_api.msg.sub_payload.SubmissionCondition attribute)
(clinvar_api.msg.sub_payload.SubmissionConditionSet attribute)
(clinvar_api.msg.sub_payload.SubmissionContainer attribute)
(clinvar_api.msg.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDrugResponse attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSets attribute)
(clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
(clinvar_api.msg.sub_payload.SubmissionPhaseUnknownSet attribute)
(clinvar_api.msg.sub_payload.SubmissionVariant attribute)
(clinvar_api.msg.sub_payload.SubmissionVariantGene attribute)
(clinvar_api.msg.sub_payload.SubmissionVariantSet attribute)
(clinvar_api.msg.sub_response.Created attribute)
(clinvar_api.msg.sub_response.Error attribute)
(clinvar_api.msg.sub_response.SummaryResponse attribute)
(clinvar_api.msg.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.msg.sub_response.SummaryResponseDeletionIdentifier attribute)
(clinvar_api.msg.sub_response.SummaryResponseError attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorInput attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorOutput attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorOutputError attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmissionIdentifiers attribute)
ModeOfInheritance (class in clinvar_api.msg.sub_payload)
modeOfInheritance (clinvar_api.msg.sub_payload.SubmissionClinicalSignificance attribute)
module
clinvar_api
clinvar_api.client
clinvar_api.common
clinvar_api.constants
clinvar_api.exceptions
clinvar_api.models
clinvar_api.models.query_response
clinvar_api.models.sub_payload
clinvar_api.models.sub_response
clinvar_api.msg
clinvar_api.msg.query_response
clinvar_api.msg.sub_payload
clinvar_api.msg.sub_response
clinvar_this
clinvar_this.cli
clinvar_this.exceptions
MONDO (clinvar_api.msg.sub_payload.ConditionDb attribute)
MULTIFACTORIAL_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
multiple_condition_explanation (clinvar_api.models.sub_payload.SubmissionConditionSet attribute)
MultipleConditionExplanation (class in clinvar_api.msg.sub_payload)
multipleConditionExplanation (clinvar_api.msg.sub_payload.SubmissionConditionSet attribute)
N
NAME
clinvar-this-batch-export command line option
clinvar-this-batch-retrieve command line option
clinvar-this-batch-submit command line option
clinvar-this-batch-update-metadata command line option
clinvar-this-config-get command line option
clinvar-this-config-set command line option
name (clinvar_api.models.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.models.sub_payload.SubmissionCondition attribute)
(clinvar_api.msg.sub_payload.SubmissionClinicalFeature attribute)
(clinvar_api.msg.sub_payload.SubmissionCondition attribute)
NCBI36 (clinvar_api.msg.sub_payload.Assembly attribute)
NO (clinvar_api.msg.sub_payload.AffectedStatus attribute)
NOT_APPLICABLE (clinvar_api.msg.sub_payload.AffectedStatus attribute)
(clinvar_api.msg.sub_payload.AlleleOrigin attribute)
NOT_PROVIDED (clinvar_api.msg.sub_payload.AffectedStatus attribute)
(clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
(clinvar_api.msg.sub_payload.CollectionMethod attribute)
NOT_RELEASED (clinvar_api.msg.sub_response.BatchReleaseStatus attribute)
NOT_TESTED (clinvar_api.msg.sub_payload.ClinicalFeaturesAffectedStatus attribute)
NOVEL (clinvar_api.msg.sub_payload.RecordStatus attribute)
NOVEL_DISEASE (clinvar_api.msg.sub_payload.MultipleConditionExplanation attribute)
number_of_individuals (clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
numberOfIndividuals (clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
O
objects (clinvar_api.models.query_response.SubmissionStatusResponse attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponse attribute)
observed_in (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
observedIn (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
OLIGO_ARRAY (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
OLIGOGENIC_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
OMIM (clinvar_api.msg.sub_payload.ConditionDb attribute)
ONE_END_ANCHORED_ASSEMBLY (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
OPTICAL_MAPPING (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
ORPHANET (clinvar_api.msg.sub_payload.ConditionDb attribute)
OTHER (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
(clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
outer_start (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
outer_stop (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
outerStart (clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
outerStop (clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
output (clinvar_api.models.sub_response.SummaryResponseError attribute)
(clinvar_api.msg.sub_response.SummaryResponseError attribute)
OUTPUT_FILE
clinvar-this-data-acmg-class-by-freq command line option
clinvar-this-data-gene-phenotype-links command line option
clinvar-this-data-gene-variant-report command line option
clinvar-this-data-xml-to-jsonl command line option
P
PAIRED_END_MAPPING (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
PARTIAL_RELEASED (clinvar_api.msg.sub_response.BatchReleaseStatus attribute)
PARTIAL_SUCCESS (clinvar_api.msg.query_response.ErrorCode attribute)
(clinvar_api.msg.sub_response.BatchProcessingStatus attribute)
PATERNAL (clinvar_api.msg.sub_payload.AlleleOrigin attribute)
PATH
clinvar-this-batch-export command line option
clinvar-this-batch-import command line option
PATH_INPUT
clinvar-this-data-extract-vars command line option
PATH_OUTPUT_DIR
clinvar-this-data-extract-vars command line option
PATHOGENIC (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
PATHOGENIC_LOW_PENETRANCE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
phase_unknown_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
phaseUnknownSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
PHENOTYPING_ONLY (clinvar_api.msg.sub_payload.CollectionMethod attribute)
PMC (clinvar_api.msg.sub_payload.CitationDb attribute)
PRESENT (clinvar_api.msg.sub_payload.ClinicalFeaturesAffectedStatus attribute)
presubmission_validation (clinvar_api.client.Config attribute)
processing_status (clinvar_api.models.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
ProcessingStatus (class in clinvar_api.msg.query_response)
processingStatus (clinvar_api.msg.sub_response.SummaryResponseDeletion attribute)
(clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
PROTECTIVE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
PROVIDER_INTERPRETATION (clinvar_api.msg.sub_payload.CollectionMethod attribute)
PUBLIC (clinvar_api.msg.sub_payload.ReleaseStatus attribute)
PUBMED (clinvar_api.msg.sub_payload.CitationDb attribute)
Q
QueryFailed
R
READ_DEPTH (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
reason (clinvar_api.models.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
(clinvar_api.msg.sub_payload.SubmissionClinvarDeletionAccessionSet attribute)
record_status (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
RecordStatus (class in clinvar_api.msg.sub_payload)
recordStatus (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
reference_allele (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
reference_copy_number (clinvar_api.models.sub_payload.SubmissionVariant attribute)
REFERENCE_POPULATION (clinvar_api.msg.sub_payload.CollectionMethod attribute)
referenceAllele (clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
referenceCopyNumber (clinvar_api.msg.sub_payload.SubmissionVariant attribute)
release_date (clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
release_status (clinvar_api.models.sub_response.SummaryResponseSubmission attribute)
RELEASED (clinvar_api.msg.sub_response.BatchReleaseStatus attribute)
releaseDate (clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
ReleaseStatus (class in clinvar_api.msg.sub_payload)
releaseStatus (clinvar_api.msg.sub_response.SummaryResponseSubmission attribute)
RESEARCH (clinvar_api.msg.sub_payload.CollectionMethod attribute)
responses (clinvar_api.models.query_response.SubmissionStatusActions attribute)
(clinvar_api.msg.query_response.SubmissionStatusActions attribute)
retrieve_status() (clinvar_api.client.AsyncClient method)
(clinvar_api.client.Client method)
(in module clinvar_api.client)
RetrieveStatusResult (class in clinvar_api.client)
S
SEQUENCE_ALIGNMENT (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
severity (clinvar_api.models.query_response.SubmissionStatusResponseMessage attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponseMessage attribute)
SEX_LIMITED_AUTOSOMAL_DOMINANT (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
SNP_ARRAY (clinvar_api.msg.sub_payload.StructVarMethodType attribute)
SOMATIC (clinvar_api.msg.sub_payload.AlleleOrigin attribute)
SOMATIC_MUTATION (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
SPORADIC (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
star_allele_name (clinvar_api.models.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSet attribute)
starAlleleName (clinvar_api.msg.sub_payload.SubmissionDiplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSet attribute)
start (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
status (clinvar_api.client.RetrieveStatusResult attribute)
(clinvar_api.models.query_response.SubmissionStatusActions attribute)
(clinvar_api.models.query_response.SubmissionStatusResponse attribute)
(clinvar_api.msg.query_response.SubmissionStatusActions attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponse attribute)
stop (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
(clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
struct_var_method_type (clinvar_api.models.sub_payload.SubmissionObservedIn attribute)
StructVarMethodType (class in clinvar_api.msg.sub_payload)
structVarMethodType (clinvar_api.msg.sub_payload.SubmissionObservedIn attribute)
submission_date (clinvar_api.models.sub_response.SummaryResponse attribute)
submission_name (clinvar_api.models.sub_payload.SubmissionContainer attribute)
(clinvar_api.models.sub_response.SummaryResponse attribute)
SubmissionAssertionCriteria (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionChromosomeCoordinates (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionCitation (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionClinicalFeature (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionClinicalSignificance (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionClinvarDeletion (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionClinvarDeletionAccessionSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionClinvarSubmission (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionCompoundHeterozygoteSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionCompoundHeterozygoteSetVariantSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionCondition (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionConditionSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionContainer (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
submissionDate (clinvar_api.msg.sub_response.SummaryResponse attribute)
SubmissionDiplotypeSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionDistinctChromosomesSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionDrugResponse (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionFailed
SubmissionHaplotypeSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionHaplotypeSets (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
submissionName (clinvar_api.msg.sub_payload.SubmissionContainer attribute)
(clinvar_api.msg.sub_response.SummaryResponse attribute)
SubmissionObservedIn (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionPhaseUnknownSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
submissions (clinvar_api.models.sub_response.SummaryResponse attribute)
(clinvar_api.msg.sub_response.SummaryResponse attribute)
SubmissionStatus (class in clinvar_api.models.query_response)
(class in clinvar_api.msg.query_response)
SubmissionStatusActions (class in clinvar_api.models.query_response)
(class in clinvar_api.msg.query_response)
SubmissionStatusFile (class in clinvar_api.models.query_response)
(class in clinvar_api.msg.query_response)
SubmissionStatusObject (class in clinvar_api.models.query_response)
(class in clinvar_api.msg.query_response)
SubmissionStatusObjectContent (class in clinvar_api.models.query_response)
(class in clinvar_api.msg.query_response)
SubmissionStatusResponse (class in clinvar_api.models.query_response)
(class in clinvar_api.msg.query_response)
SubmissionStatusResponseMessage (class in clinvar_api.models.query_response)
(class in clinvar_api.msg.query_response)
SubmissionVariant (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionVariantGene (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
SubmissionVariantSet (class in clinvar_api.models.sub_payload)
(class in clinvar_api.msg.sub_payload)
submit_data() (clinvar_api.client.AsyncClient method)
(clinvar_api.client.Client method)
(in module clinvar_api.client)
SUCCESS (clinvar_api.msg.query_response.ErrorCode attribute)
(clinvar_api.msg.query_response.ProcessingStatus attribute)
(clinvar_api.msg.sub_response.BatchProcessingStatus attribute)
SUFFIX_DRYRUN (in module clinvar_api.client)
summaries (clinvar_api.client.RetrieveStatusResult attribute)
SummaryResponse (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseDeletion (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseDeletionIdentifier (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseError (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseErrorInput (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseErrorOutput (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseErrorOutputError (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseSubmission (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
SummaryResponseSubmissionIdentifiers (class in clinvar_api.models.sub_response)
(class in clinvar_api.msg.sub_response)
symbol (clinvar_api.models.sub_payload.SubmissionVariantGene attribute)
(clinvar_api.msg.sub_payload.SubmissionVariantGene attribute)
T
TANDEM_DUPLICATIOn (clinvar_api.msg.sub_payload.VariantType attribute)
target_db (clinvar_api.models.query_response.SubmissionStatusActions attribute)
(clinvar_api.models.query_response.SubmissionStatusObject attribute)
targetDb (clinvar_api.msg.query_response.SubmissionStatusActions attribute)
(clinvar_api.msg.query_response.SubmissionStatusObject attribute)
text (clinvar_api.models.query_response.SubmissionStatusResponseMessage attribute)
(clinvar_api.msg.query_response.SubmissionStatusResponseMessage attribute)
to_msg() (clinvar_api.models.sub_payload.SubmissionAssertionCriteria method)
(clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates method)
(clinvar_api.models.sub_payload.SubmissionCitation method)
(clinvar_api.models.sub_payload.SubmissionClinicalFeature method)
(clinvar_api.models.sub_payload.SubmissionClinicalSignificance method)
(clinvar_api.models.sub_payload.SubmissionClinvarDeletion method)
(clinvar_api.models.sub_payload.SubmissionClinvarDeletionAccessionSet method)
(clinvar_api.models.sub_payload.SubmissionClinvarSubmission method)
(clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSet method)
(clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSetVariantSet method)
(clinvar_api.models.sub_payload.SubmissionCondition method)
(clinvar_api.models.sub_payload.SubmissionConditionSet method)
(clinvar_api.models.sub_payload.SubmissionContainer method)
(clinvar_api.models.sub_payload.SubmissionDiplotypeSet method)
(clinvar_api.models.sub_payload.SubmissionDistinctChromosomesSet method)
(clinvar_api.models.sub_payload.SubmissionDrugResponse method)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSet method)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSets method)
(clinvar_api.models.sub_payload.SubmissionObservedIn method)
(clinvar_api.models.sub_payload.SubmissionPhaseUnknownSet method)
(clinvar_api.models.sub_payload.SubmissionVariant method)
(clinvar_api.models.sub_payload.SubmissionVariantGene method)
(clinvar_api.models.sub_payload.SubmissionVariantSet method)
total_count (clinvar_api.models.sub_response.SummaryResponse attribute)
total_delete_count (clinvar_api.models.sub_response.SummaryResponse attribute)
total_delete_errors (clinvar_api.models.sub_response.SummaryResponse attribute)
total_delete_success (clinvar_api.models.sub_response.SummaryResponse attribute)
total_deleted (clinvar_api.models.sub_response.SummaryResponse attribute)
total_errors (clinvar_api.models.sub_response.SummaryResponse attribute)
total_public (clinvar_api.models.sub_response.SummaryResponse attribute)
total_success (clinvar_api.models.sub_response.SummaryResponse attribute)
totalCount (clinvar_api.msg.sub_response.SummaryResponse attribute)
totalDeleteCount (clinvar_api.msg.sub_response.SummaryResponse attribute)
totalDeleted (clinvar_api.msg.sub_response.SummaryResponse attribute)
totalDeleteErrors (clinvar_api.msg.sub_response.SummaryResponse attribute)
totalDeleteSuccess (clinvar_api.msg.sub_response.SummaryResponse attribute)
totalErrors (clinvar_api.msg.sub_response.SummaryResponse attribute)
totalPublic (clinvar_api.msg.sub_response.SummaryResponse attribute)
totalSuccess (clinvar_api.msg.sub_response.SummaryResponse attribute)
TRANSLOCATION (clinvar_api.msg.sub_payload.VariantType attribute)
U
UNCERTAIN (clinvar_api.msg.sub_payload.MultipleConditionExplanation attribute)
UNCERTAIN_RISK_ALLELE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
UNCERTAIN_SIGNIFICANCE (clinvar_api.msg.sub_payload.ClinicalSignificanceDescription attribute)
UNKNOWN (clinvar_api.msg.sub_payload.AffectedStatus attribute)
(clinvar_api.msg.sub_payload.AlleleOrigin attribute)
UNKNOWN_MECHANISM (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
UPDATE (clinvar_api.msg.sub_payload.RecordStatus attribute)
updated (clinvar_api.models.query_response.SubmissionStatusActions attribute)
(clinvar_api.msg.query_response.SubmissionStatusActions attribute)
url (clinvar_api.models.query_response.SubmissionStatusFile attribute)
(clinvar_api.models.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.models.sub_payload.SubmissionCitation attribute)
(clinvar_api.msg.query_response.SubmissionStatusFile attribute)
(clinvar_api.msg.sub_payload.SubmissionAssertionCriteria attribute)
(clinvar_api.msg.sub_payload.SubmissionCitation attribute)
use_dryrun (clinvar_api.client.Config attribute)
use_testing (clinvar_api.client.Config attribute)
user_message (clinvar_api.models.sub_response.SummaryResponseErrorOutputError attribute)
userMessage (clinvar_api.msg.sub_response.SummaryResponseErrorOutputError attribute)
V
VALUE
clinvar-this-config-set command line option
value (clinvar_api.models.sub_response.SummaryResponseErrorInput attribute)
(clinvar_api.msg.sub_response.SummaryResponseErrorInput attribute)
variant (clinvar_api.models.sub_payload.SubmissionVariantSet attribute)
(clinvar_api.msg.sub_payload.SubmissionVariantSet attribute)
variant_length (clinvar_api.models.sub_payload.SubmissionChromosomeCoordinates attribute)
variant_set (clinvar_api.models.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSetVariantSet attribute)
variant_sets (clinvar_api.models.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
variant_type (clinvar_api.models.sub_payload.SubmissionVariant attribute)
variantLength (clinvar_api.msg.sub_payload.SubmissionChromosomeCoordinates attribute)
variants (clinvar_api.models.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.models.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.models.sub_payload.SubmissionPhaseUnknownSet attribute)
(clinvar_api.msg.sub_payload.SubmissionDistinctChromosomesSet attribute)
(clinvar_api.msg.sub_payload.SubmissionHaplotypeSet attribute)
(clinvar_api.msg.sub_payload.SubmissionPhaseUnknownSet attribute)
variantSet (clinvar_api.msg.sub_payload.SubmissionClinvarSubmission attribute)
(clinvar_api.msg.sub_payload.SubmissionCompoundHeterozygoteSetVariantSet attribute)
variantSets (clinvar_api.msg.sub_payload.SubmissionCompoundHeterozygoteSet attribute)
VariantType (class in clinvar_api.msg.sub_payload)
variantType (clinvar_api.msg.sub_payload.SubmissionVariant attribute)
verify_ssl (clinvar_api.client.Config attribute)
X
X_LINKED_DOMINANT_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
X_LINKED_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
X_LINKED_RECESSIVE_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
Y
Y_LINKED_INHERITANCE (clinvar_api.msg.sub_payload.ModeOfInheritance attribute)
YES (clinvar_api.msg.sub_payload.AffectedStatus attribute)
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